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# Cameron Mura
# March 2002
#
# PyMOL script to make simple ribbon diagram of the Pae SurE dimer
# One monomer will be colored red, the other blue. 
#####################################################################

# set background color to white:
bg_color white

# load pdb file and call the PyMOL object "sure":
load PaeSurE_dimer.pdb, sure

# Here's a view roughly down the NCS 2-fold:
set_view (\
    -0.175670698,   -0.976156294,   -0.127523899,\
    -0.224906310,    0.165907040,   -0.960153282,\
     0.958413720,   -0.139989302,   -0.248687431,\
     0.033374116,    1.539206982, -224.156631470,\
     2.275085449,   59.647106171,   39.718311310,\
   170.546813965,  290.546813965,    1.000000000 )

# Hide all the atoms, then make the cartoon and display just the ribbons:
hide everything, sure
cartoon auto, sure
show cartoon, sure
set cartoon_fancy_helices=1
#set cartoon_flat_sheets = 0    # Other options not used here...
#set cartoon_smooth_loops = 0

# Select the two chains of the Pae SurE dimer and color them red and blue:
select sure_a = (sure and chain A)
select sure_b = (sure and chain B)
deselect

color blue, sure_a
color red, sure_b

clip slab, 60

set antialias = 1
set gamma = 1.15
set orthoscopic = 1

# Do ray-tracing, write out .png files, and quit PyMOL:

ray 800,600
png PaeSurE_simple_ribbons.png
quit