# pymol script file to illustrate variable loop settings load 1I8F_a.pdb, 1i8f_a # set to a view that nicely illustrates the loops: set_view (\ 0.252599776, -0.950250924, -0.182256490,\ -0.367805272, 0.079922885, -0.926462352,\ 0.894936323, 0.301060170, -0.329318911,\ -0.000040548, 0.000025667, -92.031204224,\ 42.281970978, 68.843681335, 17.403038025,\ 68.469779968, 115.589462280, 0.000000000 ) util.ss('1i8f_a') show cartoon, all ray png 1i8f_a_default_loops.png # default value of 'cartoon_loop_radius' is 0.2, so let's double it: set cartoon_loop_radius, 0.4 ray png 1i8f_a_thicker_loops.png