# set background color to white
#bg_color white

set antialias = 1
set gamma = 1.15
set orthoscopic = 1

set sphere_scale, 0.2
set stick_radius = 0.085

load mycl2_b0.pdb, mycl2_b0
hide everything, (mycl2_b0)

show sticks, (mycl2_b0)
show spheres, (mycl2_b0)
#set sphere_transparency, 0.5
set stick_transparency, 0.4
color salmon, (mycl2_b0)

load mycl2_b0_sfall2.map, mymap2, 1, ccp4, 1
isomesh mesh2, mymap2, 1.5, (all), 10.0

set mesh_width, 0.5
set mesh_quality, 10
set mesh_radius = 0.0065

show cell, mesh2

### cut below here and paste into script ###
set_view (\
    -0.864324331,   -0.041679401,    0.501205087,\
    -0.502919316,    0.063683458,   -0.861982226,\
     0.004008406,   -0.997098923,   -0.076005593,\
     0.000000000,    0.000000000,  -42.818607330,\
     5.000000000,    5.000000000,    5.000000000,\
    29.987010956,   55.650230408,    1.000000000 )
### cut above here and paste into script ###

#ray 1800,1400
#png fig_cad_site_apic_density.png
#quit