The following materials include video animations provided as part of the
Supplementary Information for
"Molecular
dynamics of a κB DNA element: Base flipping via cross-strand intercalative
stacking in a microsecond-scale simulation", by Mura & McCammon.
Please note the following:
» Descriptions of files and folders are provided below.
» The movies are somewhat lengthy, with durations ranging from ≈ 44 sec
(BarbedTerminus) to ≈ 3.5 min
(Overview).
» Depending on network speed, it may be more efficient to download (right-click,
'save link as') any "LARGE"
versions of animations rather than to stream them in a browser...
» The folders "SMALLER_FIGURES/" and "SMALLER_MOVIES/" contain smaller versions of the corresponding files.
Downloadable file suffixes and corresponding formats:
*.txt → plaintext *.pdf → Portable Document Format (PDF) *.sxw → OpenOffice Writer *.doc → Microsoft Word *.ppt → Microsoft PowerPoint *.gif → GIF image (still or animated) *.png → Portable Network Graphic (image) *.mpg → Motion Picture Experts Group (MPEG-1; video) *.avi → Audio-Video Interleaved (video) *.html → usual, just click on it *.tcl → Tcl script file (most likely uses VMD's Tcl API) *.py → Python module/script file (most likely uses VMD's Python API)
Name Last modified Size Description![[DIR]](/icons/back.gif){kind=icon}
Parent Directory -
![[DIR]](/icons/folder.gif){kind=icon}
SMALLER_MOVIES/ 14-Apr-2009 11:03 - Supp. Movies A → D (smaller versions)
![[VID]](/icons/movie.gif){kind=icon}
XStrandStacking_LARGE.mpg 03-Oct-2007 13:10 210M Supp. Movie A (87.5s) larger version
![[ ]](/~cmura/ICONS_etc/acrobatDocIcon.png){kind=icon}
Mura_SuppAnimations_Summary.pdf 21-Nov-2007 15:07 153K README (provides detailed descriptions of the animations)