The following materials include video animations provided as part of the
Supplementary Information for
"Molecular dynamics of a κB DNA element: Base flipping
via cross-strand intercalative stacking in a microsecond-scale simulation",
by Mura & McCammon, Nucleic Acids Research (2008), 36(15),
Please note the following:
» Descriptions of files and folders are provided below.
» The movies are somewhat lengthy, with durations ranging from ≈ 44 sec
(BarbedTerminus) to ≈ 3.5 min
» Depending on network speed, it may be more efficient to download
(right-click, 'save link as') any "LARGE" versions of animations, rather
than try to stream them in a browser...
» The folders "SMALLER_FIGURES/" and "SMALLER_MOVIES/" contain smaller versions of the corresponding files.
Downloadable file suffixes and corresponding formats:
*.txt → plaintext *.pdf → Portable Document Format (PDF) *.sxw → OpenOffice Writer *.doc → Microsoft Word *.ppt → Microsoft PowerPoint *.gif → GIF image (still or animated) *.png → Portable Network Graphic (image) *.mpg → Motion Picture Experts Group (MPEG-1; video) *.avi → Audio-Video Interleaved (video) *.html → usual, just click on it *.tcl → Tcl script file (most likely uses VMD's Tcl API) *.py → Python module/script file (most likely uses VMD's Python API)